Transcript 510629

Transcript

ID CARD

MetamORF ID

510629

ENSMUST00000148612

Name

Nudc-203

Strand

Biotype

processed_transcript

Start-end positions

133534228-133535927

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:18221

Aliases

ENSMUSG00000028851,
MGI:106014, NCBI:18221, Nudc,
OFF:Nudc, SIG-92, Silg92

Chr 4

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
510784	60	CTG ...	LNR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Spleen_B_cell
58706	42	ATG ...	MRR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
1379065	66	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
1016362	255	CTG ...	LAK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E
513370	51	ATG ...	MRR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
57814	63	ATG ...	MQR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
510628	180	CTG ...	LSS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, R1E, Spleen_B_cell
1080	45	CTG ...	LMR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell

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