Transcript 332555

Transcript

ID CARD

MetamORF ID

332555

ENSMUST00000022087

Name

Nsun2-201

Strand

Biotype

protein_coding

Start-end positions

69612244-69635780

CDS Start-stop positions

69612403-69633851

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:28114

Aliases

D13Wsu123e,
ENSMUSG00000021595, MGI:107252, Misu,
NCBI:28114, Nsun2, OFF:Nsun2

Chr 13

ORFs

85 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
783905	30	TTG ...	LMS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E
1305555	36	TTG ...	LQW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
784123	30	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
782752	57	CTG ...	LAV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell
1305336	99	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
782471	33	ATG ...	MTH ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
1850393	33	GTG ...	VQP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1301288	51	CTG ...	LPQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
339792	45	GTG ...	VVK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, R1E
1850041	30	GTG ...	VTS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
334004	180	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, R1E
1137124	51	GTG ...	VWV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
782057	93	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1301687	57	ATA ...	IHC ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1305566	60	ATC ...	ILY ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1305386	72	ACG ...	TEG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1305367	114	ATT ...	ILR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1763735	84	CTG ...	LAY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
782779	30	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
1303144	57	AGG ...	REN ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1302164	183	AGG ...	RYW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
1302824	87	ATT ...	IVS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
464510	99	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
783911	72	GTG ...	VGG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, R1E
461694	60	TTG ...	LWQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
1764294	159	TTG ...	LWQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
1301750	75	AAG ...	KKI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1302538	51	ATA ...	ITV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1137577	63	ATG ...	MIL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
1303100	63	TTG ...	LYS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E
782454	66	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
784428	42	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
782071	99	TTG ...	LQT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E
1305530	111	ATA ...	ITV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1305359	171	CTG ...	LEG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E
782864	90	CTG ...	LQK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E
1301627	159	AGG ...	RES ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
783643	108	ATG ...	MRM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, R1E
1305374	66	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1137536	81	TTG ...	LYS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E
783002	90	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
332554	42	GTG ...	VKN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
1304840	30	ATC ...	IKE ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
465343	93	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1137811	102	TTG ...	LDL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E
782637	132	CTG ...	LPA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, R1E
336170	93	ATG ...	MGP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, R1E
1305348	48	ATG ...	MIE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
1304357	39	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
782227	39	GTG ...	VCS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1137828	69	CTG ...	LKM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E
1303950	84	TTG ...	LDL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E
1301435	57	ATG ...	MWL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
464550	90	GTG ...	VTQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
783161	66	TTG ...	LQL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
462067	72	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
784317	102	GTG ...	VKN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
782397	135	ATG ...	MLP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, R1E
784583	105	GTG ...	VVK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
1305872	63	AAG ...	KRF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
784740	111	CTG ...	LRI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
1301647	66	GTG ...	VPH ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
10526	75	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
782591	141	ATG ...	MRM ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, E14, R1E
1848712	222	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
782404	114	CTG ...	LEM ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, E14, R1E
1302491	105	ATC ...	IQT ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1850661	33	GTG ...	VMS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1304582	30	ATG ...	MPW ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E
10638	66	ATG ...	MDN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
782090	102	ATG ...	MPS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, R1E
461968	33	ATG ...	MDR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
784284	123	ATG ...	MSQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
335731	189	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, R1E
784020	99	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
338640	30	CTG ...	LKN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
784838	78	ATG ...	MWT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
1305711	93	AAG ...	KKI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1134981	45	GTG ...	VAG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E
781954	54	ATG ...	MTW ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
1301227	105	AGG ...	RMP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
1301780	51	ATC ...	ING ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
782830	39	TTG ...	LCP ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, R1E
1303416	33	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
783381	87	ATG ...	MRF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E

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