Transcript 67415 | MetamORF

Transcript

ID CARD

MetamORF ID

67415

ENSMUST00000075812

Name

Nsd2-203

Strand

Biotype

protein_coding

Start-end positions

33820725-33897966

CDS Start-stop positions

33843141-33895177

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:107823

Aliases

5830445G22Rik,
9430010A17Rik, AW555663, C130020C13Rik,
D030027O06Rik, D930023B08Rik, ENSMUSG00000057406,
MGI:1276574, mKIAA1090, MMSET,
NCBI:107823, Nsd2, OFF:Nsd2,
Whsc1, Whsc1l

Chr 5

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1061838	144	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
1240842	72	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
563931	105	CTG ...	LYS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
188231	81	TTG ...	LTL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil
188256	147	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil
1512377	45	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1557615	60	CTG ...	LQQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1557576	69	CTG ...	LGG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
571592	147	ATG ...	MYS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
564683	108	CTG ...	LNI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
180134	63	TTG ...	LQT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
830371	39	ATG ...	MPR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1558055	66	ATG ...	MPR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
569183	54	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1559306	78	TTG ...	LKN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
518668	57	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
1559635	39	TTG ...	LGL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
67414	51	ATG ...	MRC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Neutrophil, NSC, Testis
563285	144	ATG ...	MYS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
523853	183	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil
569966	42	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
522814	69	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
559256	54	CTG ...	LSK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
521381	93	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
560181	42	TTG ...	LRA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
571480	162	GTG ...	VHA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
186335	72	CTG ...	LPD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Neutrophil, NSC
571011	132	GTG ...	VMP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
564995	36	ATG ...	MWG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
573219	135	TTG ...	LVM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
566187	159	GTG ...	VHA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
564057	96	ATG ...	MPQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
524352	213	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
520457	63	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1558628	54	ATG ...	MWQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1061187	123	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
524151	225	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
561690	126	ATG ...	MPQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1559322	75	ATG ...	MCP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
519172	69	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
523019	159	CTG ...	LSP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil
186138	75	TTG ...	LTT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil
523086	234	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
563885	66	TTG ...	LGP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
523411	114	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
560049	129	GTG ...	VMP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
564265	132	TTG ...	LVM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain

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