Transcript 933078

Transcript

ID CARD

MetamORF ID

933078

ENSMUST00000165489

Name

Npepps-214

Strand

Biotype

retained_intron

Start-end positions

97206933-97241866

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:19155

Aliases

AAP-S,
ENSMUSG00000001441, goku, MGI:1101358,
MP100, NCBI:19155, Npepps,
OFF:Npepps, Psa, R74825

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1291351	135	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
309704	63	GTG ...	VTF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
300985	33	TTG ...	LDY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
934149	84	ATC ...	IQE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
1289482	39	ATC ...	IDL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1290323	132	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1286095	81	ATA ...	IAA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
933077	87	CTG ...	LLN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1285123	96	ATC ...	IRD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
993716	144	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
298376	96	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1285685	57	ATA ...	IPG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1292233	39	TTG ...	LGW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1291082	150	ATC ...	ITI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
994801	54	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1287982	42	AGG ...	RRE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
995692	102	TTG ...	LEE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
932660	63	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1290015	87	AAG ...	KKG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
307030	123	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1288900	144	ATT ...	IGG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1291552	150	AGG ...	RGL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
934787	111	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
995688	144	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14

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