Transcript 10634 | MetamORF

Transcript

ID CARD

MetamORF ID

10634

ENSMUST00000071926

Name

Nol7-201

Strand

Biotype

protein_coding

Start-end positions

43398390-43402861

CDS Start-stop positions

43398405-43401841

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:70078

Aliases

2210008F15Rik,
5730556I21Rik, ENSMUSG00000063200, MGI:1917328,
NCBI:70078, Nol7, NOP27,
OFF:Nol7, RARG-1

Chr 13

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1304927	39	ACG ...	TVD ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
333515	39	TTG ...	LFI ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
1305220	63	AGG ...	RQP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
10633	33	CTG ...	LSV ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
341263	105	TTG ...	LFI ...	Ribo-seq	TTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
341536	90	GTG ...	VNS ...	Ribo-seq	GTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
1303119	123	AGG ...	RRP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1303236	60	ACG ...	TAR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1305396	75	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
334991	93	GTG ...	VQR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
340894	30	ATG ...	MVQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
27411	42	ATG ...	MPR ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis, v6-5
332786	36	GTG ...	VDG ...	Ribo-seq	GTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1305328	75	ATT ...	IQG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1301708	33	AGG ...	RTR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
334694	66	GTG ...	VAR ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell
1302185	93	ACG ...	TAC ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
339462	195	TTG ...	LPW ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell
1305431	66	ATT ...	IRA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1305906	54	AGG ...	RSC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
340541	81	ATG ...	MQK ...	Ribo-seq	ATG		17	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1301124	132	ACG ...	TRT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
334160	147	CTG ...	LRR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell
1302678	102	AGG ...	RRS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

Export data