Transcript 413288

Transcript

ID CARD

MetamORF ID

413288

ENSMUST00000194168

Name

Nmd3-208

Strand

Biotype

retained_intron

Start-end positions

69724236-69740037

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:97112

Aliases

C87860,
ENSMUSG00000027787, MGI:2140103, NCBI:97112,
Nmd3, OFF:Nmd3

Chr 3

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53512	42	TTG ...	LKK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
1057219	90	CTG ...	LEQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
1223070	48	CTG ...	LWK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
505347	69	ATG ...	MLF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1057754	45	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
503469	66	TTG ...	LFS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1056791	90	CTG ...	LDF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, R1E
506924	117	GTG ...	VDY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
504503	135	CTG ...	LQQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
1174413	60	TTG ...	LLR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, v6-5
816965	48	CTG ...	LEG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E
504009	60	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1780886	111	TTG ...	LQN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
52268	48	TTG ...	LCL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
140378	48	GTG ...	VET ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1057731	48	CTG ...	LRI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
54097	159	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
1173987	102	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
893963	90	AGG ...	RIF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1057359	81	TTG ...	LIL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, v6-5
1223265	57	AAG ...	KST ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
503461	72	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
502807	120	GTG ...	VVD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
1174446	96	TTG ...	LPS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1056774	96	TTG ...	LIS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, R1E, v6-5
507050	153	GTG ...	VMN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
504785	126	GTG ...	VFV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
1374164	42	GTG ...	VEI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E

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