Transcript 5410 | MetamORF

Transcript

ID CARD

MetamORF ID

5410

ENSMUST00000109762

Name

Nfix-203

Strand

Biotype

protein_coding

Start-end positions

84708626-84774369

CDS Start-stop positions

84713786-84773356

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:18032

Aliases

CTF,
ENSMUSG00000001911, MGI:97311, NCBI:18032,
NF-I/X, NF1-X, NFI-X,
Nfix, OFF:Nfix

Chr 8

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1578438	36	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
253766	198	TTG ...	LSP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF
244572	99	GTG ...	VLE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
1581829	60	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
247312	33	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1794600	144	GTG ...	VGI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
241555	87	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
247229	105	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1582881	195	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
612427	147	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1581163	66	TTG ...	LRL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1569798	129	ATG ...	MQG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1580744	60	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
240235	156	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
251992	171	TTG ...	LAL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, NSC
613682	129	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1583400	198	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
81763	141	ATG ...	MSS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
236285	51	TTG ...	LCS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
5409	111	CTG ...	LVQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, Skin_tumor
252859	201	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF
236334	42	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
243444	153	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
242256	81	GTG ...	VCP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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