Transcript 18797 | MetamORF

Transcript

ID CARD

MetamORF ID

18797

ENSMUST00000167149

Name

Nfe2l1-211

Strand

Biotype

protein_coding

Start-end positions

96817414-96829502

CDS Start-stop positions

96819176-96827707

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:18023

Aliases

AA408798,
AW212678, ENSMUSG00000038615, LCR-F1,
Lcrf1, MGI:99421, NCBI:18023,
Nfe2l1, NRF1, OFF:Nfe2l1,
TCF-11, TCF11

Chr 11

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
309905	45	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
446391	30	TTG ...	LVT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
419771	108	ATC ...	IQT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	C2C12
19101	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
23444	84	GTG ...	VGM ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver, MEF, R1E, Testis
451887	39	GTG ...	VLG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
293962	99	ATG ...	MLG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1290171	45	AGG ...	RTC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
292221	117	TTG ...	LTT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1285536	33	ATA ...	IPG ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
309128	36	GTG ...	VNP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
18796	114	TTG ...	LCQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
644816	48	CTG ...	LTQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1283967	114	ATC ...	IIH ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
308896	63	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1286868	36	AGG ...	RKS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
777844	150	TTG ...	LEA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, MEF
1291894	99	ATT ...	IAS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
659022	114	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
648605	123	GTG ...	VRC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
21243	144	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
296762	87	ATG ...	MWI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
90851	78	CTG ...	LLI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis
453842	54	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
644218	54	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1292678	66	AAG ...	KLR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
646796	33	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
20875	117	GTG ...	VLC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
1284907	60	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1290845	39	AAG ...	KLI ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
20738	90	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
937579	45	TTG ...	LVS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Liver, MEF, NSC
91673	177	ATG ...	MWL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Testis
1294929	39	ATC ...	ISC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
660102	123	ATG ...	MER ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
301071	66	ATG ...	MDE ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1704581	93	GTG ...	VSQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
772135	48	ATG ...	MTH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1290801	30	GTG ...	VKI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
932255	237	ATA ...	IFN ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
646214	144	GTG ...	VNV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
309324	228	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
931976	141	ACG ...	TAQ ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
91623	156	GTG ...	VCC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
23827	78	ATG ...	MAA ...	Ribo-seq	ATG		14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
446232	36	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1292972	150	AGG ...	RIL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
446564	30	ATG ...	MAM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
647679	102	TTG ...	LRR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

Export data