Transcript 6508 | MetamORF

Transcript

ID CARD

MetamORF ID

6508

ENSMUST00000184180

Name

Nedd4-205

Strand

Biotype

retained_intron

Start-end positions

72668669-72672129

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:17999

Aliases

AA959633,
AL023035, AU019897, E430025J12Rik,
EG639396, ENSMUSG00000032216, Gm7265,
KIAA0093, MGI:97297, NCBI:17999,
Nedd4, Nedd4-1, Nedd4a,
OFF:Nedd4

Chr 9

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
417320	117	ACG ...	TCC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	C2C12
256553	33	CTG ...	LAK ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, v6-5
257423	30	GTG ...	VSL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
6507	57	GTG ...	VKV ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Skin_tumor, v6-5
269456	162	CTG ...	LDK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, C2C12, E14, v6-5
262965	48	GTG ...	VML ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
266355	54	CTG ...	LGV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
6699	63	GTG ...	VRV ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Skin_tumor, v6-5
417289	105	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
262068	66	GTG ...	VAD ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, C2C12, E14, v6-5
267473	57	ATG ...	MLG ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
417462	135	ATT ...	IPW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	C2C12
264149	48	CTG ...	LFT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
255136	69	ATG ...	MVA ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
258060	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
261547	63	ATG ...	MWM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
417425	51	AGG ...	RPG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
265433	81	TTG ...	LNP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
256819	66	CTG ...	LEE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, C2C12, E14, v6-5
417403	81	ATA ...	IRQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
417355	141	ATC ...	IRI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	C2C12
262963	51	GTG ...	VLF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5

Export data