Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

6747

ID

ENSMUST00000034740

Name

Nedd4-201

Strand

+

Biotype

protein_coding

Start-end positions

72662346-72749852

CDS Start-stop positions

72662557-72747228

CDS Relative positions

-

Sequences

Transcript sequence

CCA ...

Gene

ID

NCBI:17999

Aliases

AA959633,
AL023035, AU019897, E430025J12Rik,
EG639396, ENSMUSG00000032216, Gm7265,
KIAA0093, MGI:97297, NCBI:17999,
Nedd4, Nedd4-1, Nedd4a,
OFF:Nedd4


Chr 9

ORFs

118 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1031557 282

ATG ...

MWM ...

Ribo-seq
ATG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, R1E, v6-5
1275808 48

ACG ...

TAC ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
88100 189

TTG ...

LLC ...

Ribo-seq
TTG 14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
1033236 270

CTG ...

LTT ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, R1E, v6-5
86145 147

ATG ...

MKT ...

Ribo-seq
ATG 16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
262965 48

GTG ...

VML ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1276105 138

ATT ...

IPA ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
269073 123

CTG ...

LAG ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
1268449 63

ATA ...

IVN ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
266355 54

CTG ...

LGV ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
1270403 36

ATC ...

IQP ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
624406 30

TTG ...

LRN ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, R1E,
v6-5
1274857 198

ATA ...

IPD ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1268468 171

GTG ...

VKR ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF
1033607 285

CTG ...

LSR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    CDS
    sORF
Brain
274022 39

ATG ...

MKN ...

Ribo-seq
ATG 14 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, Neutrophil, NSC,
R1E, v6-5
439256 78

CTG ...

LTP ...

Ribo-seq
CTG 14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Spleen_B_cell, v6-5
265047 60

CTG ...

LDC ...

Ribo-seq
CTG moderate 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Spleen_B_cell, v6-5
273270 90

CTG ...

LKT ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
R1E, v6-5
628002 30

CTG ...

LLR ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, R1E
627041 39

TTG ...

LNI ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, R1E,
v6-5
1272825 30

ATC ...

IQD ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1275052 153

AGG ...

RPD ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
85059 60

ATG ...

MNL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E,
Testis, v6-5
617594 39

ATG ...

MVQ ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, R1E,
v6-5
87920 132

TTG ...

LMV ...

Ribo-seq
TTG 14 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5
84456 210

CTG ...

LTC ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
R1E, Testis, v6-5
87375 165

CTG ...

LTC ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5
1269007 39

AAG ...

KKN ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1572154 183

TTG ...

LSL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1269041 60

ATA ...

IPD ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
259664 93

CTG ...

LPL ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
R1E
87199 51

TTG ...

LLC ...

Ribo-seq
TTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
87471 180

GTG ...

VEI ...

Ribo-seq
GTG 14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
1275208 54

AAG ...

KST ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1270493 30

AAG ...

KII ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1274638 132

AAG ...

KIL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
259270 30

TTG ...

LSL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
256636 51

ATG ...

MGR ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC, R1E
272273 114

ATG ...

MSL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, NSC,
R1E
1274995 75

ATT ...

ITR ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1271847 45

ATT ...

IHH ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1273855 39

AAG ...

KIE ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1272654 177

TTG ...

LMV ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF
271255 45

CTG ...

LIR ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E,
Spleen_B_cell
87860 258

CTG ...

LSS ...

Ribo-seq
CTG 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
256296 42

ATG ...

MAQ ...

Ribo-seq
ATG strong 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, NSC,
R1E, Spleen_B_cell
87334 186

CTG ...

LCV ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, C2C12,
E14, Liver, MEF,
NSC, R1E, Testis,
v6-5
1274502 30

AAG ...

KMT ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
87446 231

TTG ...

LMC ...

Ribo-seq
TTG 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
84161 90

ATG ...

MCR ...

Ribo-seq
ATG 14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
1270579 39

ATC ...

IWI ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
624903 45

TTG ...

LLS ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
v6-5
1274722 33

ATA ...

IRT ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
974863 66

ATT ...

IPA ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
262068 66

GTG ...

VAD ...

Ribo-seq
GTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
1273069 30

ATA ...

ILQ ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
84946 120

CTG ...

LSS ...

Ribo-seq
CTG 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
1274577 60

ACG ...

TSS ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
621265 33

ATG ...

MIQ ...

Ribo-seq
ATG moderate 13 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, R1E,
v6-5
1270293 69

AGG ...

RGC ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
265494 60

GTG ...

VNI ...

Ribo-seq
GTG moderate 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5
1274550 36

AGG ...

RMI ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
267473 57

ATG ...

MLG ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
261547 63

ATG ...

MWM ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC, R1E,
Spleen_B_cell
87353 126

GTG ...

VKR ...

Ribo-seq
GTG 14 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5
1031275 276

ATG ...

MAL ...

Ribo-seq
ATG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, R1E, v6-5
83733 54

GTG ...

VWK ...

Ribo-seq
GTG 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, R1E,
Testis, v6-5
417196 252

CTG ...

LRY ...

Ribo-seq
CTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, C2C12, E14,
MEF, NSC, R1E,
v6-5
625268 222

CTG ...

LIS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
3T3, R1E, v6-5
87868 213

TTG ...

LQK ...

Ribo-seq
TTG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
264812 114

TTG ...

LFW ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
255136 69

ATG ...

MVA ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC
274279 42

CTG ...

LLQ ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, R1E,
v6-5
1570249 174

ATG ...

MVK ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
273486 48

GTG ...

VES ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
6746 54

GTG ...

VVL ...

Ribo-seq
GTG strong 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
Skin_tumor, Spleen_B_cell, v6-5
84986 75

TTG ...

LQK ...

Ribo-seq
TTG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
271682 102

TTG ...

LRN ...

Ribo-seq
TTG 15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, v6-5
88050 129

ATG ...

MVK ...

Ribo-seq
ATG 15 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, R1E,
Testis, v6-5
86797 129

GTG ...

VVR ...

Ribo-seq
GTG 17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
262983 30

ATG ...

MKM ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Spleen_B_cell
83526 42

GTG ...

VEI ...

Ribo-seq
GTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
1272301 159

TTG ...

LTM ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
83217 75

ATG ...

MDH ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, NSC,
Testis
1271735 42

AAG ...

KIL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
259968 126

CTG ...

LGC ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
R1E
1272493 198

AGG ...

RPD ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
259734 96

ATG ...

MLP ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC, R1E
1269614 123

AGG ...

RLS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
85477 93

TTG ...

LMC ...

Ribo-seq
TTG 14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
274383 48

CTG ...

LLI ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
R1E, Spleen_B_cell
257423 30

GTG ...

VSL ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
263720 36

CTG ...

LIS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
626457 42

TTG ...

LSP ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
v6-5
88055 285

ATG ...

MKT ...

Ribo-seq
ATG 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
438395 33

CTG ...

LTP ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
1274324 69

AAG ...

KSL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
273278 261

ATG ...

MDH ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, v6-5
1272240 39

AAG ...

KKE ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1269316 63

ATT ...

ITR ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
258060 45

ATG ...

MLQ ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
262280 30

TTG ...

LKM ...

Ribo-seq
TTG weak 13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Neutrophil,
R1E, Spleen_B_cell, v6-5
6158 84

TTG ...

LDD ...

Ribo-seq
TTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF, Neutrophil,
NSC
1275817 120

AGG ...

RAL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
87392 108

ATG ...

MEG ...

Ribo-seq
ATG 15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
87362 138

TTG ...

LSL ...

Ribo-seq
TTG 14 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5
264161 45

ATG ...

MAI ...

Ribo-seq
ATG strong 12 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, C2C12, E14,
Glioma, Liver, MEF,
MESC, NSC, R1E,
Spleen_B_cell, v6-5
271750 99

TTG ...

LPE ...

Ribo-seq
TTG 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, v6-5
1524856 117

TTG ...

LAS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
88125 114

TTG ...

LTM ...

Ribo-seq
TTG 16 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
84412 48

CTG ...

LCV ...

Ribo-seq
CTG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
88003 228

ATG ...

MCR ...

Ribo-seq
ATG 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
259510 69

CTG ...

LKT ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E,
Spleen_B_cell
87720 267

GTG ...

VVR ...

Ribo-seq
GTG 16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
1570738 153

ATG ...

MEG ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1270916 165

AGG ...

RAL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1275595 174

ATC ...

IQP ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5