Transcript 495900

Transcript

ID CARD

MetamORF ID

495900

ENSMUST00000110387

Name

Ncaph-201

Strand

Biotype

protein_coding

Start-end positions

127103809-127133954

CDS Start-stop positions

127104221-127133867

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:215387

Aliases

A730011O11Rik,
Brrn1, CAP-H, ENSMUSG00000034906,
HCAP-H, mCAP-H, MGI:2444777,
Ncaph, NCBI:215387, OFF:Ncaph

Chr 2

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
495899	57	TTG ...	LNR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1878859	174	TTG ...	LPD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	R1E
743582	285	TTG ...	LKQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1727454	186	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1371565	123	TTG ...	LMF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1371288	120	ATG ...	MFQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1727999	195	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
502052	201	ATG ...	MSR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
1727515	219	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
501520	261	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
1727609	204	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
743389	297	ATG ...	MEV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1727762	177	ATG ...	MIT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
501526	225	TTG ...	LNR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
1170102	165	TTG ...	LVR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5

Export data