Transcript 9842 | MetamORF

Transcript

ID CARD

MetamORF ID

9842

ENSMUST00000084828

Name

Ncapg2-201

Strand

Biotype

protein_coding

Start-end positions

116405402-116461611

CDS Start-stop positions

116407233-116460615

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:76044

Aliases

5830426I05Rik,
CAP-G2, ENSMUSG00000042029, Luzp5,
mCAP-G2, MGI:1923294, Mtb,
Ncapg2, NCBI:76044, OFF:Ncapg2

Chr 12

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1040490	39	GTG ...	VQT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
9841	42	CTG ...	LYP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, Skin_tumor, Spleen_B_cell
1604677	45	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
9917	54	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor, Spleen_B_cell
660996	51	TTG ...	LNM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
459664	45	ATG ...	MQT ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
1134331	111	ATG ...	MLH ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1133640	60	TTG ...	LKS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1606844	48	ATG ...	MNM ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1131386	39	CTG ...	LLR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
1605463	102	ATG ...	MCV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1608168	51	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	MEF
1134371	108	CTG ...	LHC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1576176	36	CTG ...	LVR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
459760	45	ATG ...	MNY ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell
663080	72	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1706522	36	CTG ...	LPC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
661127	45	ATG ...	MTA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1607936	54	CTG ...	LKW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1134410	96	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1604590	123	ATG ...	MHY ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1605000	81	CTG ...	LRT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, R1E
1133132	123	ATG ...	MPH ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1133650	93	TTG ...	LKH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1132405	69	ATG ...	MLL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1345753	33	ATG ...	MSA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
458308	42	ATG ...	MRT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
458630	48	CTG ...	LMQ ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1040519	72	CTG ...	LWI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
1133429	33	GTG ...	VAH ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1131828	36	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1607709	168	GTG ...	VLQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1606789	81	CTG ...	LCV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1133522	30	ATG ...	MKK ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1131988	66	TTG ...	LLW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
663542	66	CTG ...	LAQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1604620	114	CTG ...	LNL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1134069	96	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1133516	48	ATG ...	MCN ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1604718	108	CTG ...	LNK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
661250	57	ATG ...	MAK ...	Ribo-seq	ATG	strong	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, v6-5
1605238	105	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF
1133915	57	GTG ...	VFS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1134286	30	ATG ...	MWS ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1132728	132	TTG ...	LEN ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1132115	42	GTG ...	VSA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1134212	126	CTG ...	LKF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1607158	93	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
663866	66	GTG ...	VGI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1605764	51	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	MEF
458724	33	ATG ...	MEP ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell

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