Transcript 880 | MetamORF

Transcript

ID CARD

MetamORF ID

880

ENSMUST00000155398

Name

Nasp-208

Strand

Biotype

processed_transcript

Start-end positions

116602726-116606248

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:50927

Aliases

5033430J04Rik,
AI131596, AI317140, D4Ertd767e,
ENSMUSG00000028693, Epcs32, MGI:1355328,
Nasp, Nasp-T, NCBI:50927,
OFF:Nasp

Chr 4

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
511708	33	ATG ...	MVT ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Spleen_B_cell, v6-5
884	81	CTG ...	LKA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Skin_tumor, Spleen_B_cell, v6-5
59042	102	TTG ...	LPK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Spleen_B_cell, v6-5
56359	138	TTG ...	LEA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Spleen_B_cell, v6-5
1224939	66	AAG ...	KRT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1148	108	CTG ...	LKE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Skin_tumor, Spleen_B_cell, v6-5
1229467	30	AGG ...	RLR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
511834	45	GTG ...	VSH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Spleen_B_cell
511610	48	TTG ...	LPV ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Spleen_B_cell, v6-5
826154	48	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
513067	51	ATG ...	MTR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Spleen_B_cell, v6-5
58904	153	CTG ...	LQE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Spleen_B_cell, v6-5
513278	30	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
56607	90	TTG ...	LAY ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Spleen_B_cell, v6-5
512057	42	CTG ...	LKK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Spleen_B_cell, v6-5
879	99	CTG ...	LLP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Skin_tumor, Spleen_B_cell, v6-5
1080981	30	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
59354	180	GTG ...	VEE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Spleen_B_cell, v6-5
1226346	39	AAG ...	KKH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14

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