Transcript 211829

Transcript

ID CARD

MetamORF ID

211829

ENSMUST00000139507

Name

Napa-205

Strand

Biotype

retained_intron

Start-end positions

16107616-16115215

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:108124

Aliases

1500039N14Rik,
a-SNAP, AW209189, ENSMUSG00000006024,
hyh, MGI:104563, Napa,
NCBI:108124, OFF:Napa, RA81,
SNAP-alpha, SNAPA, SNARE

Chr 7

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
222774	99	GTG ...	VPW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver
914424	54	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
840850	51	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
211828	99	GTG ...	VAT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14
216069	33	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
211387	93	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
226450	123	CTG ...	LFY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
911622	63	AAG ...	KTT ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
225057	39	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
597683	120	CTG ...	LPN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
592866	141	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
878656	84	ATG ...	MQP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
226020	141	CTG ...	LPK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
3958	69	GTG ...	VSA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
840660	150	TTG ...	LSC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
845307	129	ATG ...	MVI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver
845179	126	GTG ...	VIC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver
597823	144	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver

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