Transcript 25262 | MetamORF

Transcript

ID CARD

MetamORF ID

25262

ENSMUST00000020886

Name

Nampt-201

Strand

Biotype

protein_coding

Start-end positions

32820335-32853349

CDS Start-stop positions

32820570-32850533

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:59027

Aliases

1110035O14Rik,
AI314458, AI480535, ENSMUSG00000020572,
MGI:1929865, NAmPRTase, Nampt,
NCBI:59027, OFF:Nampt, Pbef,
Pbef1, Visfatin

Chr 12

ORFs

104 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
459476	63	CTG ...	LWS ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
940661	87	ATA ...	ILW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
328553	138	CTG ...	LIP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil
780657	75	TTG ...	LLH ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, v6-5
940897	81	ATT ...	ISK ...	Ribo-seq	ATT		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
324789	45	ATG ...	MMS ...	Ribo-seq	ATG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
940170	54	AAG ...	KFI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
660956	30	TTG ...	LMK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver
779137	267	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14
330529	30	CTG ...	LFQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, R1E
459134	159	ATG ...	MCL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
939321	60	AAG ...	KEK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
939754	42	ATA ...	IRG ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
461218	39	ATG ...	MIF ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Spleen_B_cell, v6-5
458508	39	ATG ...	MTL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, R1E, Spleen_B_cell, v6-5
1299880	48	ATC ...	ILF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
941085	63	AAG ...	KET ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
326510	33	ATG ...	MGC ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
461419	75	TTG ...	LKK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1297544	93	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
461186	177	TTG ...	LGL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
329493	168	ATG ...	MCL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
329610	93	CTG ...	LRT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
461045	84	TTG ...	LLH ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
778721	90	ATG ...	MGQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
1300137	96	AAG ...	KCT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
331243	48	ATG ...	MTL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, Spleen_B_cell, v6-5
458345	33	GTG ...	VAR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
461299	183	ATG ...	MAL ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
458466	54	CTG ...	LLI ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
329795	69	ATG ...	MVW ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
1299727	213	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
325585	39	TTG ...	LNA ...	Ribo-seq	TTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1300267	57	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
940260	30	ATT ...	IAP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
329558	72	ATG ...	MMS ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
940151	171	CTG ...	LRT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1300009	105	ATA ...	IGH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1297698	69	AAG ...	KCT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
330316	165	CTG ...	LSS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell, v6-5
939236	114	AGG ...	RAG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1296771	135	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
331085	45	CTG ...	LFQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, v6-5
459590	45	ATG ...	MTF ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
1300014	72	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
940456	42	ATT ...	IPE ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
938968	51	ATA ...	IAM ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
324308	81	CTG ...	LVS ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
327435	141	TTG ...	LLI ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell
938792	48	ATT ...	IPT ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
461000	180	CTG ...	LFP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, R1E, Spleen_B_cell, v6-5
1300289	51	AGG ...	RNM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
778604	33	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
939286	33	AAG ...	KTM ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
331415	144	ATG ...	MLR ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
329907	60	ATG ...	MGQ ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
460580	54	TTG ...	LRN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Spleen_B_cell, v6-5
329654	147	CTG ...	LIP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
459694	33	TTG ...	LVT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, Spleen_B_cell
331066	141	CTG ...	LRQ ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1296516	159	AAG ...	KAT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
938866	51	AGG ...	RRW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
322725	78	TTG ...	LFS ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1297589	30	ATC ...	ISA ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1300367	108	AGG ...	RRP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
326492	60	ATG ...	MVW ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
330682	99	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell, v6-5
322852	42	ATG ...	MSL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
459155	99	CTG ...	LFP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, R1E, Spleen_B_cell
331380	150	TTG ...	LLI ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1299632	96	ATA ...	IGH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
460930	45	ATG ...	MAM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Spleen_B_cell, v6-5
938604	81	AGG ...	RRP ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1300390	60	ACG ...	TKE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
330679	69	ATG ...	MSL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
322551	33	ATG ...	MRV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell, v6-5
939179	75	CTG ...	LFQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
330154	42	TTG ...	LVT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, R1E, Spleen_B_cell, v6-5
323339	30	GTG ...	VKR ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell
938490	54	ATT ...	ISK ...	Ribo-seq	ATT		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
939429	33	AAG ...	KVK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
939676	288	ATG ...	MLR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
939970	72	AAG ...	KKC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1297827	276	AAG ...	KPS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
328725	42	ATG ...	MSP ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
778678	75	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
1299854	120	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
25261	84	CTG ...	LSS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell, Testis
940282	81	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
940755	99	AAG ...	KKC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
459116	69	CTG ...	LCL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell, v6-5
940666	69	AAG ...	KEK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1297748	33	AAG ...	KYR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
938959	33	CTG ...	LTL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, R1E, v6-5
940559	123	AGG ...	RAG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1300245	42	AAG ...	KEM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1296547	33	ACG ...	TKE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1300353	81	AAG ...	KAT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
940573	51	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
941058	132	AAG ...	KPS ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
780233	66	TTG ...	LKK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
1297814	63	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
330146	36	ATG ...	MAW ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
940957	60	AGG ...	RLF ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14

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