Transcript 923433

Transcript

ID CARD

MetamORF ID

923433

ENSMUST00000186003

Name

Nabp1-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

51466007-51478067

CDS Start-stop positions

51471245-51474595

CDS Relative positions

Sequences

Transcript sequence

TAG ...

Genome browsers

UCSC

Gene

NCBI:109019

Aliases

4930434H03Rik,
4930442A21Rik, 4930488J04Rik, 4933440J18Rik,
5830411E10Rik, AI852561, ENSMUSG00000026107,
MGI:1923258, Nabp1, Nbp1,
NCBI:109019, Obfc2a, OFF:Nabp1,
Ssb2

Chr 1

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9384	45	GTG ...	VSQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
430044	45	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	BMDC
950200	42	ATA ...	ISN ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	CDS NMD sORF	BMDC
942923	33	GTG ...	VNF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
956458	48	ATC ...	INV ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC
935475	42	ATA ...	IHL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
449375	93	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
460400	45	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
300763	42	GTG ...	VER ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
937002	51	ATC ...	IGG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
956104	45	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
952100	63	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	BMDC
923432	48	CTG ...	LKN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
359501	33	ATG ...	MPD ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF

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