Transcript 455 | MetamORF

Transcript

ID CARD

MetamORF ID

455

ENSMUST00000018561

Name

Myo1b-201

Strand

Biotype

protein_coding

Start-end positions

51749994-51915928

CDS Start-stop positions

51751173-51883217

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:17912

Aliases

AA406997,
ENSMUSG00000018417, MGI:107752, MIH-L,
MMIa, Myo1b, NCBI:17912,
OFF:Myo1b

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1190989	39	GTG ...	VFW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1618986	42	ATG ...	MVW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
10224	33	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
149706	258	TTG ...	LQG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	Liver
713552	63	TTG ...	LRV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
1606294	33	ATG ...	MML ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
741844	69	CTG ...	LWK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
742178	90	ATG ...	MCS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
733451	63	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
16017	165	TTG ...	LSN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
1155	168	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
891065	81	CTG ...	LLT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
109722	273	TTG ...	LSC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	Liver
1149292	45	ATG ...	MHS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
297531	30	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
744009	210	ATG ...	MKH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1615098	39	GTG ...	VWM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
865303	30	CTG ...	LKE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
10503	72	GTG ...	VRK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Skin_tumor, v6-5
454	156	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
1637500	84	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
736991	60	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1770911	33	ATG ...	MVG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1610088	54	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
738525	66	ATG ...	MLE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

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