Transcript 17652 | MetamORF

Transcript

ID CARD

MetamORF ID

17652

ENSMUST00000155765

Name

Myh10-210

Strand

Biotype

retained_intron

Start-end positions

68692154-68769643

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:77579

Aliases

5730504C04Rik,
9330167F11Rik, ENSMUSG00000020900, Fltn,
MGI:1930780, mKIAA3005, Myh10,
Myhn-2, Myhn2, NCBI:77579,
NMHC II-B, NMHC-B, NMHCII-B,
NMMHC II-b, NMMHC-B, NMMHC-IIB,
OFF:Myh10, SMemb

Chr 11

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1529972	123	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1531191	237	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1529624	144	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1527817	96	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1528434	81	ATG ...	MSF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1530425	216	TTG ...	LML ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1486988	57	ATG ...	MSV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
644086	75	CTG ...	LFV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1528439	228	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1530604	39	CTG ...	LTK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
306031	183	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1528543	195	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
651777	96	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1528411	156	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1529901	84	GTG ...	VMS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1529091	126	GTG ...	VRN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1528981	243	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
651548	72	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1530301	129	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1528183	105	TTG ...	LTF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
295578	225	CTG ...	LDW ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1701289	108	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
650264	78	GTG ...	VLF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1529636	189	TTG ...	LQW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1337858	30	ATG ...	MLE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
299462	168	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
644084	54	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1531155	159	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
1527941	213	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
1597952	63	TTG ...	LNG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1529444	126	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
652587	105	GTG ...	VNR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1527925	168	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
310565	45	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1527574	30	GTG ...	VDS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1528799	114	CTG ...	LEK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1703101	51	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1339235	45	CTG ...	LCG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
17651	63	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1529141	162	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
308076	156	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1529303	153	GTG ...	VIN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1703351	102	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
19108	36	GTG ...	VKN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
304832	195	TTG ...	LWT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

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