Transcript 38215 | MetamORF

Transcript

ID CARD

MetamORF ID

38215

ENSMUST00000019723

Name

Mydgf-201

Strand

Biotype

protein_coding

Start-end positions

56175744-56183920

CDS Start-stop positions

56176924-56183891

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:28106

Aliases

D17Wsu104e,
ENSMUSG00000019579, Il25, Ly6elg,
MGI:2156020, Mydgf, NCBI:28106,
OFF:Mydgf

Chr 17

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
383292	33	GTG ...	VNL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
482440	81	CTG ...	LRI ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
390978	81	CTG ...	LSC ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
482108	78	CTG ...	LDC ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell
38214	36	CTG ...	LCP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, Testis
481622	30	CTG ...	LRW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
479595	117	TTG ...	LPR ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, E14, Liver, MEF, Spleen_B_cell
479667	36	CTG ...	LGP ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
386268	105	ATG ...	MWC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
379784	39	GTG ...	VVV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
391602	69	GTG ...	VLR ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
704571	30	CTG ...	LRS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, NSC, R1E
390349	66	CTG ...	LRS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
705922	45	CTG ...	LSC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, NSC
379645	138	ATG ...	MEG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
709163	33	GTG ...	VLR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, NSC, R1E

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