Transcript 57372 | MetamORF

Transcript

ID CARD

MetamORF ID

57372

ENSMUST00000141962

Name

Mum1-210

Strand

Biotype

retained_intron

Start-end positions

80226680-80243898

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:68114

Aliases

2610019J09,
9430059D04Rik, ENSMUSG00000020156, MGI:1915364,
Mum1, NCBI:68114, OFF:Pwwp3a,
Pwwp3a, UBE-1C2

Chr 10

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1085776	138	GTG ...	VRI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
1580249	30	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
520813	54	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, v6-5
57371	291	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1281833	54	ACG ...	TML ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
77017	57	GTG ...	VLF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
1103480	105	ATG ...	MGR ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
1109576	153	GTG ...	VEL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
520177	66	ATG ...	MPH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
82399	96	GTG ...	VGA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Testis, v6-5
78907	111	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Testis, v6-5
1262305	129	CTG ...	LYH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
515949	45	ATG ...	MSS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, v6-5
84402	285	GTG ...	VTC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1247383	75	AGG ...	RSC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
613304	33	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
71247	69	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, Testis, v6-5
79836	144	TTG ...	LDG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Testis, v6-5
1101858	129	ATG ...	MIL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
601351	75	CTG ...	LCH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
635974	57	CTG ...	LAS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
77162	60	CTG ...	LCR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Testis
68571	297	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
81939	162	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62839	60	GTG ...	VDY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, Testis, v6-5
592333	45	CTG ...	LFW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
1177865	147	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
67729	48	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Testis, v6-5
512813	66	CTG ...	LAE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
1111586	123	CTG ...	LGY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
1668994	99	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
60614	30	CTG ...	LEE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1248576	117	AGG ...	RQL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14

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