Transcript 67662 | MetamORF

Transcript

ID CARD

MetamORF ID

67662

ENSMUST00000031866

Name

Mtpn-201

Strand

Biotype

protein_coding

Start-end positions

35508906-35539888

CDS Start-stop positions

35512231-35539610

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:14489

Aliases

5033418D15Rik,
ENSMUSG00000029840, Gcdp, MGI:99445,
Mtpn, NCBI:14489, OFF:Mtpn,
V1

Chr 6

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
67661	33	CTG ...	LQK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Spleen_B_cell, Testis
70634	81	CTG ...	LGP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF Upstream	Brain, Liver, Spleen_B_cell, Testis
70799	39	CTG ...	LQS ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, Liver, MEF, Spleen_B_cell, Testis
69084	36	GTG ...	VDS ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell, Testis
193301	54	CTG ...	LLC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Spleen_B_cell
69566	48	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
68847	84	CTG ...	LLG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, Liver, Spleen_B_cell, Testis
907027	42	ATG ...	MHS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	BMDC, Glioma, Liver, MEF, MESC
202335	246	GTG ...	VNR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
70024	30	CTG ...	LSM ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
69947	114	CTG ...	LRR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver, MEF, Spleen_B_cell, Testis
906824	78	AAG ...	KPL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
2699	48	GTG ...	VRQ ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell, Testis
204324	42	ATG ...	MLN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Brain, Glioma, Liver, MEF, MESC
71105	69	ATG ...	MLQ ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis, v6-5
68735	69	GTG ...	VEG ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell, Testis
908185	108	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	BMDC
68446	72	CTG ...	LTT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC, Brain, MEF, Testis, v6-5
193667	30	ATG ...	MDG ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Brain, Glioma, Liver, MEF, MESC, v6-5
204443	138	ATG ...	MDG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Downstream sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
909161	63	AGG ...	RQS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
3104	30	GTG ...	VGP ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell, Testis
68002	33	CTG ...	LLS ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
206028	117	TTG ...	LGR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
69030	81	TTG ...	LKP ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, MEF, Neutrophil, Testis, v6-5
909103	54	AAG ...	KLF ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
67711	45	CTG ...	LQI ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell, Testis
906665	99	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	BMDC

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