Transcript 149376

Transcript

ID CARD

MetamORF ID

149376

ENSMUST00000129836

Name

Mtfr1l-203

Strand

Biotype

retained_intron

Start-end positions

134529249-134535044

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:76824

Aliases

2410166I05Rik,
AI480750, ENSMUSG00000046671, Fam54b,
MGI:1924074, Mtfr1l, NCBI:76824,
OFF:Mtfr1l

Chr 4

ORFs

6 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1017344	60	CTG ...	LAD ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
154948	252	CTG ...	LRH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
57399	66	ATG ...	MKE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver
1016765	93	CTG ...	LCL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1016412	87	TTG ...	LKD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
149375	111	CTG ...	LPN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver

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