Transcript 175737

Transcript

ID CARD

MetamORF ID

175737

ENSMUST00000143412

Name

Mtf2-210

Strand

Biotype

nonsense_mediated_decay

Start-end positions

108065742-108108270

CDS Start-stop positions

108065961-108087065

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:17765

Aliases

9230112N11Rik,
AA537621, C76717, ENSMUSG00000029267,
M96, MGI:105050, Mtf2,
NCBI:17765, OFF:Mtf2, Pcl2

Chr 5

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1087191	81	CTG ...	LTL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
1089061	33	CTG ...	LKD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1061520	42	GTG ...	VQY ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, v6-5
559631	36	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1087730	66	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1086527	78	ATG ...	MYF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS NMD sORF	E14
1088046	33	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1088962	66	ATG ...	MQA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
175937	33	CTG ...	LEA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
1089002	51	ATG ...	MKD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1086286	63	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1086435	87	CTG ...	LSM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1087633	123	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1085869	81	ATG ...	MNI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
61961	45	TTG ...	LLL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14, v6-5
1085817	72	TTG ...	LAR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1088461	45	GTG ...	VRL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1061914	180	CTG ...	LNN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil, v6-5
1088440	156	TTG ...	LQL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1311235	45	ATG ...	MPL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	E14
1087560	93	ATG ...	MAC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1088708	54	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1383354	33	ATG ...	MSR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	CDS NMD sORF	E14, MEF
1085906	42	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1087027	42	TTG ...	LCP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
1085558	135	ATG ...	MYL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1085121	48	GTG ...	VVR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
184741	237	GTG ...	VKD ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil, v6-5
1088122	36	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF Upstream	MEF, v6-5
175736	297	TTG ...	LRR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14
1085939	141	CTG ...	LKN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
174853	72	CTG ...	LAD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
831466	114	TTG ...	LQV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
516481	81	GTG ...	VAD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
1088693	36	GTG ...	VAK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1311826	84	TTG ...	LII ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1087454	45	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1088290	48	GTG ...	VLF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1085819	42	CTG ...	LYN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	CDS NMD sORF	E14, MEF
1087705	51	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1088925	105	TTG ...	LKQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1088152	33	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
1089233	33	TTG ...	LRS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	NMD sORF Upstream	MEF, v6-5
171624	96	GTG ...	VAF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
185328	138	TTG ...	LFG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14
1061506	84	CTG ...	LQC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
176539	129	TTG ...	LRI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1312039	45	ATG ...	MGW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1088689	60	GTG ...	VTL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1062487	30	GTG ...	VEW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, v6-5
1086188	42	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
1087150	129	TTG ...	LQV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
182175	69	GTG ...	VDL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, v6-5
1085220	105	TTG ...	LFQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1086991	87	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1087806	222	CTG ...	LVH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
1087274	75	TTG ...	LNG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
177936	108	GTG ...	VPP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
1088210	48	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1312427	174	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
833084	57	ATG ...	MDI ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5

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