Transcript 336188

Transcript

ID CARD

MetamORF ID

336188

ENSMUST00000173158

Name

Mterf3-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

66912126-66933067

CDS Start-stop positions

66922930-66930203

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:66410

Aliases

2410017I18Rik,
ENSMUSG00000021519, MGI:1913660, Mterf3,
Mterfd1, NCBI:66410, OFF:Mterf3

Chr 13

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
334372	186	TTG ...	LSK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, MEF, v6-5
336743	90	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
27124	111	ATG ...	MTC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
26461	84	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
1136018	96	TTG ...	LDK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, v6-5
26979	168	GTG ...	VDD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
1302737	138	ATT ...	IVS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
332164	192	GTG ...	VDL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, MEF, v6-5
26875	288	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
27281	159	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
26711	225	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
27501	147	TTG ...	LFW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
26934	57	CTG ...	LTK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
1137319	30	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1609549	117	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1137056	141	CTG ...	LGR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, v6-5
27150	228	GTG ...	VLP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
1135945	156	TTG ...	LFL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, v6-5
783472	90	GTG ...	VKQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell
1134744	180	GTG ...	VFK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, v6-5
669323	39	CTG ...	LYP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell
27106	201	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
26721	69	CTG ...	LGP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
338069	138	CTG ...	LDF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
333578	51	ATG ...	MLF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
27367	150	TTG ...	LSP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, E14, v6-5
1136748	39	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
26581	90	TTG ...	LGL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, MEF, v6-5
339056	108	CTG ...	LLF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
26636	72	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell

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