Transcript 50997 | MetamORF

Transcript

ID CARD

MetamORF ID

50997

ENSMUST00000057216

Name

Mtch2-201

Strand

Biotype

processed_transcript

Start-end positions

90847287-90865391

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:56428

Aliases

2310034D24Rik,
4930539J07Rik, ENSMUSG00000027282, HSPC032,
MGI:1929260, Mtch2, NCBI:56428,
OFF:Mtch2

Chr 2

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1011709	96	TTG ...	LFT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
51109	48	CTG ...	LSQ ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1012390	72	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
51436	75	GTG ...	VLL ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
124106	84	TTG ...	LTP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
123649	33	ATG ...	MWD ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, NSC
970520	51	ATC ...	ILS ...	Ribo-seq	ATC		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF
1012122	216	GTG ...	VGY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
50996	69	CTG ...	LGS ...	Ribo-seq	CTG		19	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5

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