Transcript 41360 | MetamORF

Transcript

ID CARD

MetamORF ID

41360

ENSMUST00000096240

Name

Mta2-201

Strand

Biotype

protein_coding

Start-end positions

8941875-8952303

CDS Start-stop positions

8942355-8951655

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:23942

Aliases

AW550797,
ENSMUSG00000071646, Mata1l1, MGI:1346340,
mmta2, Mta1l1, Mta2,
NCBI:23942, OFF:Mta2

Chr 19

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1204625	48	ATT ...	ITC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
726688	57	CTG ...	LLM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
1501157	84	TTG ...	LKR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
1501016	51	ATG ...	MLP ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
490665	273	TTG ...	LLS ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
487847	249	CTG ...	LGL ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
722214	78	ATG ...	MPG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
41488	177	TTG ...	LPA ...	Ribo-seq	TTG	moderate	13	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
722348	60	ATG ...	MPW ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1205476	105	ACG ...	TNV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1458068	90	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
41598	39	GTG ...	VAG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Testis
1500955	105	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
723971	66	GTG ...	VLT ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, NSC
722177	72	CTG ...	LPM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
488633	87	GTG ...	VFR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, Spleen_B_cell
411753	30	ATC ...	IEL ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
1205393	87	ATT ...	ITA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
42243	147	CTG ...	LGL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
489279	84	GTG ...	VPR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, R1E, Spleen_B_cell
42010	57	CTG ...	LEP ...	Ribo-seq	CTG	strong	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
1773489	63	TTG ...	LCF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
407758	96	CTG ...	LGA ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, R1E, Spleen_B_cell
1501124	30	TTG ...	LWP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
42951	57	CTG ...	LAS ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
1205491	99	GTG ...	VPR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC
726633	90	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
411832	111	GTG ...	VRT ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	sORF Upstream	B_cell, C2C12, E14, MEF, Neutrophil, Spleen_B_cell
490071	159	GTG ...	VAD ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
1202654	105	ACG ...	TLG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
490110	141	TTG ...	LAP ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
1204623	114	AGG ...	RNG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
488207	216	TTG ...	LFS ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell
1365078	96	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1204261	90	ACG ...	TNV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
727406	156	TTG ...	LKG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14
1501183	123	ATG ...	MRW ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
726266	54	CTG ...	LML ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
1204555	168	ATT ...	ICG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1773397	54	CTG ...	LLD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
1202784	72	GTG ...	VPT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E
490145	261	CTG ...	LSR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil, Spleen_B_cell
1204303	72	ATT ...	ITA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
720184	99	CTG ...	LKP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14
718646	66	ATG ...	MEG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
489536	150	CTG ...	LRG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
42825	150	CTG ...	LLG ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
487589	60	TTG ...	LRT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
490961	54	TTG ...	LIS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
963242	99	CTG ...	LKP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC
41359	48	GTG ...	VSR ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis

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