Transcript 36033 | MetamORF

Transcript

ID CARD

MetamORF ID

36033

ENSMUST00000154236

Name

Mrps34-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

24895123-24897502

CDS Start-stop positions

24895168-24896080

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:79044

Aliases

0610007F04Rik,
5330430D13Rik, AV001970, ENSMUSG00000038880,
MGI:1930188, Mrps34, NCBI:79044,
OFF:Mrps34, Tce2

Chr 17

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36170	291	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
37190	87	CTG ...	LNL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative CDS NMD sORF	R1E, Testis
381790	105	CTG ...	LDV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
38366	237	TTG ...	LVP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative CDS NMD sORF	R1E, Testis
854620	75	CTG ...	LSW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver
37315	150	CTG ...	LRA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative CDS NMD sORF	R1E, Testis
36545	75	CTG ...	LWQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
37921	96	CTG ...	LVT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, R1E, Testis
38271	183	CTG ...	LPV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
38306	132	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
36215	159	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
1863452	33	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
382146	42	CTG ...	LCW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
38339	270	TTG ...	LRE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
37952	81	CTG ...	LER ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative CDS NMD sORF	R1E, Testis
1191174	75	AGG ...	RTR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative CDS NMD sORF	E14
481244	48	CTG ...	LNG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
1192186	111	AGG ...	RIR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
38190	279	GTG ...	VRA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
36930	105	CTG ...	LGR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, R1E, Testis
36275	210	CTG ...	LTR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
36032	177	TTG ...	LNS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative CDS NMD sORF	R1E, Testis
36312	153	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative CDS NMD sORF	R1E, Testis
36133	114	TTG ...	LFG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, R1E, Testis
481526	117	TTG ...	LAF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
37816	33	GTG ...	VRP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
702930	114	GTG ...	VRI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver

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