Transcript 124388

Transcript

ID CARD

MetamORF ID

124388

ENSMUST00000027256

Name

Mrpl30-201

Strand

Biotype

protein_coding

Start-end positions

37890477-37898535

CDS Start-stop positions

37893965-37898264

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:107734

Aliases

2310001L22Rik,
ENSMUSG00000026087, L30mt, MGI:1333820,
MRP-L28, MRP-L30, Mrpl30,
NCBI:107734, OFF:Mrpl30, Rpml28

Chr 1

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
804568	78	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
1641633	150	TTG ...	LNV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	MEF
390971	69	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
124387	87	GTG ...	VDT ...	Ribo-seq	GTG		10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
31580	42	ATG ...	MLS ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil
815793	81	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
1642485	189	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
34398	51	CTG ...	LAG ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	sORF Upstream	Brain, E14, Liver, MEF, Neutrophil, v6-5
394163	60	ATG ...	MKS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
388070	51	ATG ...	MVG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
410087	39	CTG ...	LSA ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	Brain, E14, Liver, MEF, Neutrophil
361303	48	GTG ...	VGT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
391391	30	CTG ...	LIT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, E14, Liver, MEF, Neutrophil
203489	51	CTG ...	LGF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil
492001	54	CTG ...	LGF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, R1E, v6-5
746013	138	CTG ...	LGP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF

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