Transcript 29084 | MetamORF

Transcript

ID CARD

MetamORF ID

29084

ENSMUST00000152370

Name

Mphosph8-204

Strand

Biotype

processed_transcript

Start-end positions

56693424-56697428

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:75339

Aliases

1500035L22Rik,
4930548G07Rik, AU040635, ENSMUSG00000079184,
MGI:1922589, Mphosph8, NCBI:75339,
OFF:Mphosph8

Chr 14

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1139171	96	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1309250	153	AGG ...	RDY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1140974	93	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
30041	78	TTG ...	LFI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5
1139530	39	TTG ...	LWT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1139229	72	ATG ...	MQT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1309634	123	ATC ...	IGS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1138549	48	TTG ...	LFI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1140090	30	ATG ...	MQC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
29249	114	TTG ...	LGK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis, v6-5
1138630	69	TTG ...	LQK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1140186	30	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
30442	66	TTG ...	LTE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5
29189	36	TTG ...	LLI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Testis, v6-5
1140827	33	ATG ...	MIN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1138304	30	TTG ...	LLY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
29083	123	CTG ...	LEP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1614498	45	TTG ...	LLG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1306392	63	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14
1306825	102	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14

Export data