Transcript 5057 | MetamORF

Transcript

ID CARD

MetamORF ID

5057

ENSMUST00000211308

Name

Mmp2-202

Strand

Biotype

processed_transcript

Start-end positions

92843531-92853002

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:17390

Aliases

Clg4a,
ENSMUSG00000031740, GelA, MGI:97009,
MMP-2, Mmp2, NCBI:17390,
OFF:Mmp2

Chr 8

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
245686	96	CTG ...	LVA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, v6-5
1580482	51	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
5783	117	CTG ...	LQG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Skin_tumor, v6-5
5619	66	CTG ...	LEN ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Skin_tumor, v6-5
1326379	39	CTG ...	LLV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
5130	93	TTG ...	LPP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Skin_tumor, v6-5
5690	51	GTG ...	VYE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Skin_tumor, v6-5
5210	108	CTG ...	LTS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Skin_tumor, v6-5
5855	204	GTG ...	VKK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Skin_tumor, v6-5
246765	99	TTG ...	LLV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, v6-5
5208	42	GTG ...	VKF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Skin_tumor
5179	132	CTG ...	LER ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Skin_tumor, v6-5
5225	93	GTG ...	VAT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, Skin_tumor, v6-5
5734	123	GTG ...	VDL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Skin_tumor, v6-5
5741	135	CTG ...	LDA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Skin_tumor, v6-5
5217	99	CTG ...	LGL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Skin_tumor, v6-5
611008	63	CTG ...	LIT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
608672	72	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
5056	72	CTG ...	LKL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Skin_tumor, v6-5
5484	129	GTG ...	VTP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Skin_tumor, v6-5
608777	57	ATG ...	MST ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5

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