Transcript 500130

Transcript

ID CARD

MetamORF ID

500130

ENSMUST00000144143

Name

Mmadhc-205

Strand

Biotype

protein_coding

Start-end positions

50281141-50296681

CDS Start-stop positions

-50296260

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:109129

Aliases

2010311D03Rik,
AI314967, CblD, ENSMUSG00000026766,
MGI:1923786, Mmadhc, NCBI:109129,
OFF:Mmadhc

Chr 2

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
51547	108	ATG ...	MWP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	B_cell, Liver, Spleen_B_cell
863380	135	CTG ...	LLN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
864210	132	TTG ...	LNK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
51467	138	CTG ...	LQD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, B_cell, Liver, Spleen_B_cell
863347	144	GTG ...	VMH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver
863149	114	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver
863092	141	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
51452	117	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, B_cell, Liver, Spleen_B_cell
1207875	33	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
863224	99	TTG ...	LKV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
864300	78	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver
860481	42	TTG ...	LDL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
105494	60	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Liver
864109	159	ATG ...	MSF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
863514	84	TTG ...	LSV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
105585	63	CTG ...	LMK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
45217	45	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
50179	120	CTG ...	LMS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, B_cell, Liver, Spleen_B_cell
863768	93	GTG ...	VPK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver

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