Transcript 44372 | MetamORF

Transcript

ID CARD

MetamORF ID

44372

ENSMUST00000144275

Name

Mkks-203

Strand

Biotype

protein_coding

Start-end positions

136881219-136891154

CDS Start-stop positions

-136881235

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:59030

Aliases

1300013E18Rik,
AI463362, AI957237, Bbs6,
ENSMUSG00000027274, MGI:1891836, Mkks,
NCBI:59030, OFF:Mkks

Chr 2

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45813	135	ATG ...	MVP ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	sORF	B_cell, Brain, R1E, Testis
113018	102	CTG ...	LER ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
93125	138	GTG ...	VLM ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF	B_cell, Brain, MEF, R1E
122942	168	GTG ...	VQR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	3T3, Brain, Liver, MEF, Neutrophil, v6-5
97361	183	TTG ...	LNL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, R1E
742485	93	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
116496	177	CTG ...	LNL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	Brain, R1E
112091	81	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
104362	60	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
99200	132	ATG ...	MST ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
46072	144	CTG ...	LMV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	B_cell, Brain, R1E, Testis
125641	180	ATG ...	MVT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	3T3, Brain, Liver, v6-5
46552	108	TTG ...	LGW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	B_cell, Brain, R1E, Testis
744758	123	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
95688	42	GTG ...	VAQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	B_cell, Brain
107005	111	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
117809	165	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, R1E
117868	156	ATG ...	MTF ...	Ribo-seq	ATG		11	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
97870	105	GTG ...	VTF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	Brain, R1E
93165	171	TTG ...	LII ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, R1E
100880	36	CTG ...	LGL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
101724	48	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
116128	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
46215	180	ATG ...	MSF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	B_cell, Brain, R1E, Testis
97905	153	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
96085	135	CTG ...	LMS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	Brain, MEF, R1E
94019	114	GTG ...	VAG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	Brain, R1E
97402	153	ATG ...	MKN ...	Predicted Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Mackowiak2015	sORF	Brain, R1E
96270	45	CTG ...	LDS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
44371	141	ATG ...	MVM ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	B_cell, Brain, R1E, Testis

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