Transcript 33289 | MetamORF

Transcript

ID CARD

MetamORF ID

33289

ENSMUST00000099554

Name

Mis18a-201

Strand

Biotype

protein_coding

Start-end positions

90719312-90727404

CDS Start-stop positions

90719898-90727272

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:66578

Aliases

2610039C10Rik,
2810018N07Rik, ENSMUSG00000022978, MGI:1913828,
Mis18a, NCBI:66578, OFF:Mis18a

Chr 16

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
375048	51	CTG ...	LHG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
377606	129	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
371194	54	GTG ...	VGK ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, v6-5
794772	93	TTG ...	LAM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
1622026	123	GTG ...	VVK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	MEF
33288	30	CTG ...	LLP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, E14, MEF, Testis, v6-5
34791	39	ATG ...	MSW ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	sORF Upstream	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Testis, v6-5
371634	30	CTG ...	LGC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, MEF, NSC, v6-5
33496	48	ATG ...	MAA ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
474565	162	ATG ...	MFL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	Glioma, Liver, MEF, MESC, v6-5
371983	42	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
475315	174	CTG ...	LVS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, v6-5
33920	102	ATG ...	MRR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC, Testis
476853	57	CTG ...	LWI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
34588	81	GTG ...	VRF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
475816	147	TTG ...	LWL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
376905	87	ATG ...	MCT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, R1E, v6-5

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