Transcript 419947

Transcript

ID CARD

MetamORF ID

419947

ENSMUST00000153755

Name

Mipol1-210

Strand

Biotype

retained_intron

Start-end positions

57230427-57308695

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:73490

Aliases

1700081O04Rik,
6030439O22Rik, AU021838, AW536152,
D12Ertd19e, ENSMUSG00000047022, MGI:1920740,
Mipol1, NCBI:73490, OFF:Mipol1

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
660791	78	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
664180	66	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1298376	108	ACG ...	TRS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1131895	30	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1297768	60	ATG ...	MES ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1299306	54	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1131508	39	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1298421	120	AAG ...	KMK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1297707	105	ATT ...	ISL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1297812	135	ATA ...	IPQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1297323	39	GTG ...	VIF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1299711	282	ACG ...	TRA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1297347	69	ATC ...	ICS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1132546	51	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
664257	36	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1298837	39	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1298162	132	ATG ...	MLA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
458674	81	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1298508	60	AGG ...	RCG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
938516	63	ATT ...	IGC ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1298894	108	ATC ...	IVW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
24980	33	GTG ...	VAV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
1299045	90	ATA ...	ILS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14

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