Transcript 535544

Transcript

ID CARD

MetamORF ID

535544

ENSMUST00000039537

Name

Mindy1-201

Strand

Biotype

protein_coding

Start-end positions

95282944-95296166

CDS Start-stop positions

95287948-95295731

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:75007

Aliases

1810005H09Rik,
4930504E06Rik, AA562754, AA960384,
AW561904, cI-40, ENSMUSG00000038712,
Fam63a, MGI:1922257, Mindy1,
mKIAA1390, NCBI:75007, ni,
OFF:Mindy1

Chr 3

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1505890	33	GTG ...	VRA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
537821	192	ATG ...	MRP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
539267	219	GTG ...	VQK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
541664	66	TTG ...	LTC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1647297	66	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
751376	81	ATG ...	MVK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
1170902	30	TTG ...	LTF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
536521	93	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Neutrophil
751794	78	GTG ...	VKI ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
136227	72	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
866269	78	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
750909	126	CTG ...	LEN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
540332	276	CTG ...	LYP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
543348	93	TTG ...	LSI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
747402	57	CTG ...	LIT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	v6-5
747233	135	ATG ...	MEQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
536840	150	ATG ...	MVQ ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
865126	33	CTG ...	LCE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
750411	81	ATG ...	MAC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
750162	33	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil
749807	147	GTG ...	VQM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
537913	54	TTG ...	LTC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
537142	51	GTG ...	VFQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
538793	57	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
127496	39	CTG ...	LDA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
747809	180	CTG ...	LDQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
542931	120	ATG ...	MCD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
540953	291	ATG ...	MEQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3
1172955	87	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	v6-5
542772	273	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3
749773	120	GTG ...	VPC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
536350	141	ATG ...	MLM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
866641	54	CTG ...	LKL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
752573	201	CTG ...	LKT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
748295	138	CTG ...	LME ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
751491	111	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
541167	48	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
538921	69	TTG ...	LSV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
129044	54	CTG ...	LVT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, v6-5

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