Transcript 22630 | MetamORF

Transcript

ID CARD

MetamORF ID

22630

ENSMUST00000124407

Name

Mif4gd-204

Strand

Biotype

processed_transcript

Start-end positions

115607918-115612887

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:69674

Aliases

1110014L05Rik,
2310075G12Rik, ENSMUSG00000020743, MGI:1916924,
Mif4gd, NCBI:69674, OFF:Mif4gd

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
23306	246	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
91886	87	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
19975	102	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
22807	144	CTG ...	LQD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, R1E, Testis, v6-5
21265	90	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
21502	135	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
91920	213	CTG ...	LQL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
23078	186	GTG ...	VDL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, R1E, Testis, v6-5
90757	84	CTG ...	LEM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
21846	228	GTG ...	VDC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
19564	93	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
20422	186	CTG ...	LEK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
91748	126	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
23202	156	GTG ...	VDH ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Testis, v6-5
24123	162	GTG ...	VIV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, R1E, Testis, v6-5
22650	264	CTG ...	LAQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, v6-5
1288587	42	ATA ...	IKS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
22629	33	CTG ...	LQK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, R1E, Testis
21818	207	CTG ...	LHR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
306476	48	ATG ...	MII ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
20975	219	CTG ...	LVL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
305844	36	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
18400	90	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
296471	87	ATG ...	MMR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
91285	216	GTG ...	VLQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
298659	84	ATG ...	MRG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
300929	117	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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