Transcript 9072 | MetamORF

Transcript

ID CARD

MetamORF ID

9072

ENSMUST00000002655

Name

Mien1-201

Strand

Biotype

protein_coding

Start-end positions

98437708-98438991

CDS Start-stop positions

98438062-98438946

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

NCBI:103742

Aliases

1810046J19Rik,
AI463380, ENSMUSG00000002580, MGI:1913678,
Mien1, NCBI:103742, OFF:Mien1,
Rdx12

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9071	69	TTG ...	LRS ...	Ribo-seq	TTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
23282	228	GTG ...	VPR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	CDS sORF	Brain, E14, Testis
22459	201	CTG ...	LLF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	CDS sORF	3T3, Brain, E14, Neutrophil, Testis, v6-5
24050	198	TTG ...	LFL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	CDS sORF	3T3, Brain, E14, MEF, Neutrophil, Testis, v6-5
9513	99	ATG ...	MDS ...	Ribo-seq	ATG		19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
305397	30	ATG ...	MEG ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, NSC, R1E, Spleen_B_cell
22908	231	GTG ...	VVP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	CDS sORF	Brain, E14, Testis
9351	150	TTG ...	LRL ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
649261	36	TTG ...	LRR ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF
22167	60	ATG ...	MDS ...	Ribo-seq	ATG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, Testis, v6-5
931143	36	AAG ...	KPS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
9517	144	TTG ...	LSR ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
23740	213	CTG ...	LNF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	CDS sORF	Brain, E14, Neutrophil, Testis, v6-5
1293628	159	ATC ...	IRA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
9529	108	TTG ...	LRS ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
9299	69	ATG ...	MEG ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
319562	78	GTG ...	VES ...	Ribo-seq	GTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
23818	246	TTG ...	LLG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	CDS sORF	Brain, E14, Testis

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