Transcript 87940 | MetamORF

Transcript

ID CARD

MetamORF ID

87940

ENSMUST00000124179

Name

Midn-203

Strand

Biotype

processed_transcript

Start-end positions

80149886-80153687

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:59090

Aliases

3000003C15Rik,
ENSMUSG00000035621, MGI:1890222, Midn,
NCBI:59090, OFF:Midn

Chr 10

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
210562	105	CTG ...	LSV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
87939	111	TTG ...	LTL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, Neutrophil, NSC, Spleen_B_cell, Testis
180130	39	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
224557	99	GTG ...	VPH ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
290345	102	GTG ...	VPT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, Neutrophil, NSC
272412	48	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
90270	144	CTG ...	LQE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
218182	141	CTG ...	LAI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
209991	72	CTG ...	LRK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
213356	177	CTG ...	LNT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, NSC, v6-5
288078	93	GTG ...	VEA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, Neutrophil, NSC
253944	60	TTG ...	LSQ ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
179603	81	CTG ...	LQE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
516748	120	TTG ...	LIA ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
90406	129	GTG ...	VGD ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
284777	66	GTG ...	VGD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
163997	81	GTG ...	VEG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5

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