Transcript 33862 | MetamORF

Transcript

ID CARD

MetamORF ID

33862

ENSMUST00000070658

Name

Mgrn1-202

Strand

Biotype

protein_coding

Start-end positions

4886100-4938296

CDS Start-stop positions

4886386-4934235

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:17237

Aliases

2610042J20Rik,
ENSMUSG00000022517, md, MGI:2447670,
Mgrn1, mKIAA0544, nc,
NCBI:17237, OFF:Mgrn1

Chr 16

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
794901	33	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
1453716	36	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
35087	54	CTG ...	LLS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, Spleen_B_cell, Testis, v6-5
696719	39	ATG ...	MPV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
1768460	54	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	MEF
696528	48	TTG ...	LMP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
374091	99	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
371875	51	TTG ...	LTL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
699172	96	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
375417	156	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
952278	87	ATC ...	IES ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
952789	144	ACG ...	TPQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
477810	63	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
693810	93	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
477509	51	ATG ...	MCS ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
34929	99	ATG ...	MET ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
33861	51	CTG ...	LSG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, Spleen_B_cell, Testis
375625	114	CTG ...	LAG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Spleen_B_cell
34900	30	TTG ...	LTW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis, v6-5
372779	228	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
370075	42	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
370897	213	TTG ...	LRH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
371473	72	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
370360	201	ATG ...	MVY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
369865	150	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
699472	51	TTG ...	LSG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
370798	252	CTG ...	LTV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
372232	84	TTG ...	LLR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
696791	33	GTG ...	VWL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
370968	189	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
374355	69	CTG ...	LMM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
371274	231	ATG ...	MSP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
375403	33	TTG ...	LTS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF
369988	165	TTG ...	LGH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
376695	132	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
373744	177	GTG ...	VRP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
369108	36	CTG ...	LKV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
696911	42	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
371914	87	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
374277	66	ATG ...	MMR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
372794	180	TTG ...	LVR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
473817	45	GTG ...	VGT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
371361	63	ATG ...	MRT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
699157	93	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
375423	42	CTG ...	LSW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF
368501	54	GTG ...	VTT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
699126	75	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
696812	45	ATG ...	MPM ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
692145	63	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1495819	81	GTG ...	VCG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
375520	237	CTG ...	LAM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
372626	87	GTG ...	VKS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell

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