Transcript 24673 | MetamORF

Transcript

ID CARD

MetamORF ID

24673

ENSMUST00000060579

Name

Mgat2-201

Strand

Biotype

protein_coding

Start-end positions

69184157-69186770

CDS Start-stop positions

69184654-69185982

CDS Relative positions

498-1826

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:217664

Aliases

AA407964,
CDGS2, ENSMUSG00000043998, GLCNACTII,
GNT-II, GNT2, Mgat2,
MGI:2384966, NCBI:217664, OFF:Mgat2

Chr 12

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
24672	39	ATG ...	MER ...	Predicted Ribo-seq	ATG	moderate	15	sORFs_org_Mouse Mackowiak2015 Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
1448668	39	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1846986	45	CTG ...	LPE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
940192	30	AGG ...	RTQ ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
661463	249	CTG ...	LRR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14
660316	78	TTG ...	LSE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Neutrophil
328501	96	TTG ...	LEI ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF
662269	72	GTG ...	VSA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Neutrophil
662423	66	GTG ...	VVC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
325316	51	CTG ...	LQL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E
660906	147	CTG ...	LTP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
458641	90	ATG ...	MGD ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
665273	78	ATG ...	MLE ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
323526	60	CTG ...	LPE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E
938662	33	ATG ...	MRG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E
326822	30	ATG ...	MHG ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, v6-5
324536	159	GTG ...	VVE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
321916	36	ATG ...	MII ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF
1297387	33	AGG ...	RTE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
663923	156	GTG ...	VEA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
662411	159	ATG ...	MPN ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
665437	33	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
664482	237	GTG ...	VSP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
1847798	30	GTG ...	VTL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
662968	84	ATG ...	MHI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1344969	30	CTG ...	LES ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
780674	63	CTG ...	LPE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Neutrophil
664088	162	TTG ...	LVV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
664110	96	CTG ...	LVR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1847496	114	CTG ...	LNG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
664569	66	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
326249	75	TTG ...	LYG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
663247	78	ATG ...	MTA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
661351	30	CTG ...	LWY ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
939416	96	ATT ...	IGG ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
663607	45	CTG ...	LGL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, v6-5
25890	54	GTG ...	VRA ...	Ribo-seq	GTG	moderate	18	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
665465	75	CTG ...	LET ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1846310	45	ATG ...	MSF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
780382	156	GTG ...	VGR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
325897	117	GTG ...	VLN ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E
660937	138	ATG ...	MGK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
321178	39	CTG ...	LDS ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, v6-5
25850	42	ATG ...	MSA ...	Ribo-seq	ATG	moderate	20	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
664677	36	GTG ...	VET ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF

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