Transcript 504593

Transcript

ID CARD

MetamORF ID

504593

ENSMUST00000174323

Name

Mettl14-204

Strand

Biotype

protein_coding

Start-end positions

123368297-123385985

CDS Start-stop positions

123371207-123385827

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:210529

Aliases

ENSMUSG00000028114,
G430022H21Rik, Mettl14, MGI:2442926,
mKIAA1627, NCBI:210529, OFF:Mettl14

Chr 3

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1220517	159	AAG ...	KSD ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Downstream sORF	E14
1218003	84	AGG ...	RWR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
1219129	138	CTG ...	LRD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
1220129	192	AGG ...	RLR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Downstream sORF	E14
143036	99	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
504592	33	CTG ...	LRV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell
138112	30	ATG ...	MKE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
750582	48	CTG ...	LTD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
141413	48	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1175821	39	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1222125	51	ATC ...	ISL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1222735	78	ATT ...	IFV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
749112	78	TTG ...	LDQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
1222697	84	ATC ...	ISA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
536750	51	TTG ...	LAG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
1223149	36	AAG ...	KNT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
144879	117	ATG ...	MNR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
537083	105	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
1221885	33	ATC ...	IPI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1175456	33	ATG ...	MRN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1218231	81	CTG ...	LVW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
1219755	285	ACG ...	TLT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Downstream sORF	E14

Export data