Transcript 128875

Transcript

ID CARD

MetamORF ID

128875

ENSMUST00000119251

Name

Mef2d-204

Strand

Biotype

protein_coding

Start-end positions

88142416-88169930

CDS Start-stop positions

88155809-88168353

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:17261

Aliases

C80750,
ENSMUSG00000001419, Mef2d, MGI:99533,
NCBI:17261, OFF:Mef2d

Chr 3

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1373006	54	GTG ...	VQS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
819609	135	GTG ...	VRL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
752357	114	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
817353	87	CTG ...	LAK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
508564	129	GTG ...	VDA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
821643	204	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
136645	51	ATG ...	MRP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
749528	96	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
821051	96	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
820670	159	GTG ...	VCC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
54950	99	GTG ...	VTP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, Spleen_B_cell
818680	123	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
816813	129	CTG ...	LRD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
138833	186	GTG ...	VCC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
818755	63	CTG ...	LAL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF
504149	30	ATG ...	MDG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
817471	285	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	E14
128874	108	CTG ...	LFR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
508116	150	CTG ...	LWR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
142216	75	CTG ...	LEA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, Spleen_B_cell
541598	222	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1376120	234	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
821395	255	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
503791	33	CTG ...	LCI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, Spleen_B_cell
126812	66	GTG ...	VHR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, Spleen_B_cell, v6-5
508327	153	CTG ...	LRL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Spleen_B_cell
128002	33	ATG ...	MMD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
127594	63	CTG ...	LED ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
535700	39	CTG ...	LIT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF
507755	111	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell

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