Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

148619

ID

ENSMUST00000125323

Name

Mdn1-204

Strand

+

Biotype

processed_transcript

Start-end positions

32704635-32775198

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

ACA ...

Gene

ID

NCBI:100019

Aliases

4833432B22Rik,
A130070M06, AA958993, D4Abb1e,
ENSMUSG00000058006, Gm135, Mdn1,
MGI:1926159, NCBI:100019, OFF:Mdn1


Chr 4

ORFs

144 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1082315 30

TTG ...

LLK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1653600 54

ATG ...

MPY ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1083824 99

TTG ...

LSL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
R1E, v6-5
1178194 132

GTG ...

VEG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082386 36

ATG ...

MSG ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1656667 30

CTG ...

LRP ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1178651 30

GTG ...

VVP ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
898889 66

AGG ...

RVL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1178437 159

CTG ...

LQS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177780 222

CTG ...

LHQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178032 39

GTG ...

VCC ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1082553 177

TTG ...

LCL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081106 39

CTG ...

LEV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082518 90

TTG ...

LLF ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1058700 48

CTG ...

LEL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil, v6-5
1176432 57

TTG ...

LDG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082283 48

CTG ...

LQC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1178030 135

GTG ...

VPG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1657303 33

GTG ...

VTG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1081188 87

GTG ...

VFA ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
550756 102

TTG ...

LHP ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, v6-5
1177875 78

CTG ...

LLS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1653610 75

ATG ...

MRR ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1178292 72

CTG ...

LSL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178574 138

TTG ...

LSV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176572 153

CTG ...

LPS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1378701 33

CTG ...

LFP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1082858 72

CTG ...

LVF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1084423 84

GTG ...

VGH ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
R1E, v6-5
1080789 33

GTG ...

VLL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1080598 105

CTG ...

LQC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1082288 75

CTG ...

LSH ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1081482 105

CTG ...

LLH ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1177190 36

TTG ...

LII ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
1379658 162

GTG ...

VDM ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1177063 192

CTG ...

LIH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081247 129

CTG ...

LDR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176279 102

CTG ...

LWN ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1655407 36

TTG ...

LVQ ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1081469 144

GTG ...

VDP ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176353 66

ATG ...

MPV ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081914 42

TTG ...

LSV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178394 168

CTG ...

LYC ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1379094 36

GTG ...

VEF ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1176255 30

TTG ...

LSM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081733 195

GTG ...

VLS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1083032 108

CTG ...

LYR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081749 54

GTG ...

VPG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082558 102

CTG ...

LVV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177142 192

CTG ...

LSE ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
897795 159

AGG ...

RIC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
899258 120

CTG ...

LNA ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, v6-5
1082304 39

CTG ...

LWG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177606 45

ATG ...

MLV ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
897452 105

AAG ...

KFG ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1653690 57

ATG ...

MAI ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1080638 132

TTG ...

LPK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
508921 51

TTG ...

LSL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
1082445 42

CTG ...

LES ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1233457 168

ATA ...

IWC ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1081303 66

CTG ...

LVF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082280 186

TTG ...

LAR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1657439 33

CTG ...

LKR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
148618 78

GTG ...

VNA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain
1080836 93

CTG ...

LKT ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1176102 240

CTG ...

LAS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178661 42

ATG ...

MGE ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082595 93

TTG ...

LYH ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
548768 33

CTG ...

LRK ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, v6-5
900155 108

ATC ...

ISS ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1652544 66

ATG ...

MRK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1654323 60

ATG ...

MPP ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1178155 54

CTG ...

LQS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177478 42

TTG ...

LSC ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
1178420 168

CTG ...

LVE ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176113 117

CTG ...

LQS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
896970 261

ATT ...

ILS ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1081933 63

TTG ...

LAV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177315 72

GTG ...

VKI ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1082402 45

CTG ...

LMG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176441 132

GTG ...

VLD ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1652271 51

GTG ...

VGR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1653300 54

ATG ...

MKT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1083086 45

CTG ...

LNG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178659 81

CTG ...

LKT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176445 57

CTG ...

LCE ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
1653738 42

CTG ...

LEW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1080586 147

CTG ...

LNK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178230 48

TTG ...

LPH ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081888 30

TTG ...

LVK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177553 123

CTG ...

LVQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176266 51

CTG ...

LWR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
510703 36

GTG ...

VES ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
1082453 30

CTG ...

LMD ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082591 231

CTG ...

LDG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178014 93

TTG ...

LTE ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
897577 33

ATA ...

IDS ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1082998 180

TTG ...

LDI ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1656917 45

CTG ...

LCS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1177177 36

CTG ...

LAA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177955 180

GTG ...

VIS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176244 45

GTG ...

VLS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
825184 60

CTG ...

LSW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177038 69

CTG ...

LAD ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1652964 69

ATG ...

MMR ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1176579 105

TTG ...

LKI ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1657454 30

ATG ...

MCR ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1081963 45

CTG ...

LSV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
896821 45

AGG ...

RES ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
511364 45

CTG ...

LYL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
1177718 198

GTG ...

VML ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177967 300

TTG ...

LME ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1083160 108

TTG ...

LEP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1655169 30

CTG ...

LLF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1178371 66

CTG ...

LQS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
1083075 48

TTG ...

LTS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1178335 36

ATG ...

MID ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
898420 36

TTG ...

LGS ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, v6-5
1176259 129

CTG ...

LEG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177083 222

CTG ...

LCQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177150 48

TTG ...

LGG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081204 117

CTG ...

LRR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
512459 33

ATG ...

MCS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
1081864 225

TTG ...

LLC ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1656228 42

CTG ...

LDL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1176247 108

TTG ...

LPR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176854 66

ATG ...

MSE ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
1177200 111

CTG ...

LAH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1652030 30

TTG ...

LES ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1655605 45

GTG ...

VTV ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1176406 57

GTG ...

VIG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081917 42

TTG ...

LIL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082372 186

CTG ...

LSY ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
511576 54

CTG ...

LRL ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, Neutrophil,
Spleen_B_cell, v6-5
1176742 135

GTG ...

VRL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082195 39

CTG ...

LPS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1080950 30

CTG ...

LLW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1176183 249

CTG ...

LEN ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082426 48

CTG ...

LED ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
899182 147

TTG ...

LLV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1081194 168

CTG ...

LKF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1081045 33

GTG ...

VAS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1082026 57

TTG ...

LKD ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1177179 201

CTG ...

LEP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5