Transcript 56094 | MetamORF

Transcript

ID CARD

MetamORF ID

56094

ENSMUST00000092584

Name

Marcks-201

Strand

Biotype

protein_coding

Start-end positions

37133375-37138920

CDS Start-stop positions

37136108-37138535

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:17118

Aliases

ENSMUSG00000069662,
Macs, Marcks, MGI:96907,
NCBI:17118, OFF:Marcks, PKCSL

Chr 10

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
67964	120	TTG ...	LKK ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
1256933	273	AGG ...	RSP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
62119	87	GTG ...	VPP ...	Ribo-seq	GTG	weak	14	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
60864	63	CTG ...	LLL ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Testis, v6-5
171993	255	TTG ...	LGS ...	Ribo-seq	TTG	moderate	18	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, NSC, Spleen_B_cell, v6-5
208353	123	CTG ...	LGF ...	Ribo-seq	CTG	strong	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, MEF, NSC, v6-5
1270652	165	AGG ...	RPS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
80493	60	CTG ...	LLA ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Spleen_B_cell, Testis, v6-5
72447	66	CTG ...	LLL ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Testis, v6-5
90256	114	GTG ...	VPS ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
902221	300	ATC ...	IWD ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF
1282826	87	AGG ...	REK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
89964	51	CTG ...	LWP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Testis
918847	267	AGG ...	RRQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
58610	123	TTG ...	LLK ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, NSC, Testis, v6-5
1575914	129	AAG ...	KKP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
910300	108	ATT ...	ITS ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
66131	93	GTG ...	VCV ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
79869	102	GTG ...	VPS ...	Ribo-seq	GTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis
56115	75	CTG ...	LLL ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
1518818	213	GTG ...	VQS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC
418441	117	AAG ...	KKP ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Overlapping sORF Upstream	C2C12, MEF
180447	240	GTG ...	VLD ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
554318	54	TTG ...	LCS ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, v6-5
198963	33	CTG ...	LRC ...	Ribo-seq	CTG	weak	14	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
87239	135	TTG ...	LLK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Testis
220233	192	TTG ...	LIS ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Spleen_B_cell, v6-5
903772	132	AGG ...	RRP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
60904	39	CTG ...	LWP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Testis
83476	69	CTG ...	LLL ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Testis, v6-5
921724	72	ATT ...	ISP ...	Ribo-seq	ATT	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF
56093	252	GTG ...	VPR ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, Testis
928962	81	AAG ...	KPP ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
57835	222	ATG ...	MRL ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, Testis
916746	69	AAG ...	KPP ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1245843	75	AGG ...	REK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
829592	222	CTG ...	LSR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, NSC
833573	204	CTG ...	LPP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, NSC
245419	102	GTG ...	VCR ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
72116	72	TTG ...	LLL ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Testis, v6-5
78257	216	CTG ...	LPR ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, Testis
754022	243	ATG ...	MRP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC
65609	171	CTG ...	LRR ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, Testis
90507	132	TTG ...	LKK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF, Testis

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