Transcript 61400 | MetamORF

Transcript

ID CARD

MetamORF ID

61400

ENSMUST00000201347

Name

Mapre3-203

Strand

Biotype

retained_intron

Start-end positions

30814733-30866059

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:100732

Aliases

AI790651,
EB2, EB3, EBF3,
ENSMUSG00000029166, Mapre3, MGI:2140967,
NCBI:100732, OFF:Mapre3, RP3

Chr 5

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
64224	177	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62171	183	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62234	114	CTG ...	LDD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
65184	189	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
65735	129	TTG ...	LRD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
183630	132	CTG ...	LPV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	NSC
63753	114	CTG ...	LIC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
61399	36	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
63979	48	GTG ...	VAM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62099	120	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
63347	174	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
61708	42	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
171409	102	CTG ...	LCS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	NSC
65730	192	CTG ...	LLD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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