Transcript 5977 | MetamORF

Transcript

ID CARD

MetamORF ID

5977

ENSMUST00000049355

Name

Mapk6-201

Strand

Biotype

protein_coding

Start-end positions

75386904-75410005

CDS Start-stop positions

75388052-75398133

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:50772

Aliases

2610021I23Rik,
D130053K17Rik, ENSMUSG00000042688, Erk3,
Mapk4, Mapk6, Mapk63,
MGI:1354946, NCBI:50772, OFF:Mapk6,
Prkm4, Prkm6

Chr 9

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
627841	51	CTG ...	LVK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
6719	75	CTG ...	LTS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Skin_tumor
624150	30	GTG ...	VHM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1830220	93	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
6382	69	CTG ...	LQT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
624334	42	TTG ...	LTC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
922292	42	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, v6-5
1269512	60	ATA ...	ITW ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
263535	57	ATG ...	MNI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	BMDC, Brain, Glioma, Liver, MEF, MESC, R1E, v6-5
620212	153	ATG ...	MCW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
627538	165	TTG ...	LAW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1332044	36	ATG ...	MVQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
255864	48	ATG ...	MST ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1110770	45	TTG ...	LNY ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, v6-5
1331008	120	ATG ...	MPG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1111779	66	CTG ...	LQS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, v6-5
6613	51	CTG ...	LAV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
6429	105	ATG ...	MRC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
617058	186	TTG ...	LFR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
924652	129	CTG ...	LHS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
627195	198	ATG ...	MKH ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
5976	54	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
621150	138	ATG ...	MTG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
921825	48	AAG ...	KKP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
6503	114	TTG ...	LIS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
437665	45	TTG ...	LIL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
257109	36	ATG ...	MSA ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1330184	33	ATG ...	MSP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
87294	33	ATG ...	MSR ...	Ribo-seq	ATG		15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, C2C12, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
621121	63	GTG ...	VSN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1114637	126	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1586814	30	TTG ...	LIW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
921538	33	ATT ...	IRK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
622016	42	CTG ...	LRR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
258144	69	CTG ...	LRQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, R1E
624821	42	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
434470	54	ATG ...	MLS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1268619	57	AAG ...	KKS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1588757	36	TTG ...	LQV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1111854	96	TTG ...	LSF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
88106	39	CTG ...	LSM ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1584203	36	ATG ...	MAL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
625977	78	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
6285	42	CTG ...	LLR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E
615988	114	CTG ...	LKD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
922206	36	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
6017	45	ATG ...	MLL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC, R1E
759415	90	GTG ...	VGS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1111681	87	TTG ...	LSV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
6630	93	TTG ...	LTQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
623460	84	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
268199	69	TTG ...	LAS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, v6-5
623173	63	ATG ...	MKK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
1271144	30	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	R1E

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