Transcript 33485 | MetamORF

Transcript

ID CARD

MetamORF ID

33485

ENSMUST00000115731

Name

Mapk1-203

Strand

Biotype

protein_coding

Start-end positions

16983567-17039040

CDS Start-stop positions

16983627-17038430

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:26413

Aliases

9030612K14Rik,
AA407128, AU018647, C78273,
ENSMUSG00000063358, ERK, Erk2,
Mapk1, MAPK2, MGI:1346858,
NCBI:26413, OFF:Mapk1, p41mapk,
p42mapk, Prkm1, PRKM2

Chr 16

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
369453	57	ATG ...	MRT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
372288	57	TTG ...	LLS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
33669	69	GTG ...	VQP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Spleen_B_cell, Testis
370563	87	TTG ...	LIF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
369140	51	TTG ...	LAL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
371890	45	TTG ...	LPV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
373456	87	CTG ...	LLM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell
695197	33	TTG ...	LST ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
372167	81	ATG ...	MII ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF
373670	36	TTG ...	LQI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
794589	204	TTG ...	LKL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC, MEF, R1E
375400	36	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
34099	66	TTG ...	LKL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Testis
372735	60	CTG ...	LHP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
373548	30	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
375678	72	TTG ...	LVC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
375793	57	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
794652	198	TTG ...	LNR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC, MEF, R1E
373341	63	TTG ...	LVQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
33484	60	TTG ...	LNR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Testis
373795	75	CTG ...	LWA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
374999	39	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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