Transcript 36792 | MetamORF

Transcript

ID CARD

MetamORF ID

36792

ENSMUST00000086723

Name

Man2a1-201

Strand

Biotype

protein_coding

Start-end positions

64600736-64755110

CDS Start-stop positions

64601736-64752572

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:17158

Aliases

ENSMUSG00000024085,
Man2a1, Mana-2, Mana2,
Map-2, MGI:104669, NCBI:17158,
OFF:Man2a1

Chr 17

ORFs

132 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
710329	264	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
855634	63	TTG ...	LIA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
701920	54	CTG ...	LIR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF
956833	81	ATG ...	MVV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
957194	261	ATC ...	ILK ...	Ribo-seq	ATC		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
702177	261	GTG ...	VAG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
710159	165	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
708654	48	GTG ...	VAT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
955339	39	ATT ...	ICF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
701403	153	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
956516	135	ATC ...	IST ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
38619	66	TTG ...	LLS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Testis
482822	108	TTG ...	LQG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell
706816	180	TTG ...	LPP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
955984	33	AAG ...	KNG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
955408	81	ACG ...	TWK ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
956486	45	ATC ...	IPL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
956975	63	ACG ...	TTI ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1717570	33	TTG ...	LKG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1153230	81	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
482126	48	GTG ...	VAP ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF Upstream	3T3, Liver, Neutrophil, Spleen_B_cell
711301	75	GTG ...	VIS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
705121	123	TTG ...	LKS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
703480	42	TTG ...	LLH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
707362	39	TTG ...	LER ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, v6-5
710977	108	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
705230	63	CTG ...	LTP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
479437	69	GTG ...	VPA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, Liver, MEF, Spleen_B_cell
956603	84	AAG ...	KPT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
479524	42	GTG ...	VRT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Spleen_B_cell
710756	72	TTG ...	LIA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF
956917	219	ATA ...	IIQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
710109	78	CTG ...	LEW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
703800	54	GTG ...	VPY ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
710966	60	TTG ...	LLH ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
709898	162	ATG ...	MAG ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
706764	114	CTG ...	LDF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
710991	108	GTG ...	VNF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver
710279	42	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
479914	90	TTG ...	LGR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell
1626403	42	TTG ...	LGY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
708595	114	GTG ...	VRS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
702799	135	CTG ...	LTA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
710675	270	GTG ...	VGL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
707003	30	ATG ...	MKP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
708325	216	GTG ...	VQP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
702479	51	ATG ...	MTT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
383296	30	CTG ...	LLK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, v6-5
957510	60	AAG ...	KQG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
703600	39	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
710653	72	ATG ...	MMP ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
709446	69	ATG ...	MPS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
954396	42	ATC ...	ICS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
957468	51	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
708265	123	CTG ...	LGH ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF
37435	51	CTG ...	LPC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Testis
704823	33	CTG ...	LIM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
955082	45	AGG ...	RTK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
386889	75	TTG ...	LTI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Spleen_B_cell
386280	51	CTG ...	LRT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell
702746	240	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
701194	93	GTG ...	VET ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
705786	153	TTG ...	LLP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
1626145	36	CTG ...	LWR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
709663	84	TTG ...	LGS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, v6-5
705202	39	GTG ...	VGY ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
702123	72	CTG ...	LTE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, Neutrophil
704044	135	GTG ...	VLH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
702061	57	TTG ...	LWS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
708298	204	CTG ...	LGN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
956993	75	ATT ...	IPR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
478400	213	CTG ...	LPL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
710445	36	TTG ...	LWT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
481473	228	TTG ...	LWG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Spleen_B_cell
701247	165	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
710343	165	ATG ...	MSK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF
709113	135	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
37307	81	GTG ...	VGT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Testis
1626906	54	CTG ...	LET ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
703404	111	GTG ...	VCG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
954567	90	ATG ...	MIT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
482240	189	CTG ...	LPT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
480916	72	CTG ...	LES ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, Liver, MEF, Spleen_B_cell
711026	240	TTG ...	LIL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF
1358449	33	TTG ...	LVI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
704802	60	GTG ...	VNT ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, MEF
956025	75	TTG ...	LGK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
712379	102	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
956860	54	ATA ...	IRL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
708773	48	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
707636	39	TTG ...	LNK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
710565	240	CTG ...	LGG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
701671	252	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
954794	81	ATT ...	IMQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
707308	78	ATG ...	MQS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF
705434	54	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
702618	141	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
710865	210	ATG ...	MVV ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
701767	87	TTG ...	LEP ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, v6-5
956982	132	ATC ...	ILK ...	Ribo-seq	ATC		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
704129	201	TTG ...	LWG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
711671	81	CTG ...	LTP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil
706853	276	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
392112	96	CTG ...	LET ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, v6-5
1192551	240	AGG ...	RKA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
706606	126	CTG ...	LGA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, Liver, MEF
707972	42	ATG ...	MVG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
479673	216	TTG ...	LPC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
707917	39	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
956039	39	TTG ...	LLW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
701995	33	TTG ...	LDL ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, v6-5
705724	78	GTG ...	VNF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
956978	39	ATC ...	IPS ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
706087	117	GTG ...	VLD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
711582	171	CTG ...	LEM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF
478714	207	TTG ...	LSR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
711866	48	GTG ...	VGV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
955862	30	AAG ...	KEL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
701422	111	TTG ...	LIL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
704766	177	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
709999	222	CTG ...	LEA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF
480942	51	GTG ...	VVA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, Liver, Neutrophil, Spleen_B_cell
707278	246	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
705398	33	CTG ...	LMK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
706755	210	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
36791	99	CTG ...	LQE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Testis
388117	30	TTG ...	LEI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
957341	108	ACG ...	TWK ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
703278	45	GTG ...	VIS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
955369	78	ACG ...	TFT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
705172	147	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
955152	93	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

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