Transcript 88604 | MetamORF

Transcript

ID CARD

MetamORF ID

88604

ENSMUST00000138731

Name

Maged1-204

Strand

Biotype

retained_intron

Start-end positions

94536082-94537884

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:94275

Aliases

2810433C11Rik,
5430405L04Rik, Dlixin, Dlxin-1,
Dlxin1, DXBwg1492e, ENSMUSG00000025151,
MAGE-D1, Maged1, MGI:1930187,
NCBI:94275, NRAGE, OFF:Maged1

Chr X

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89485	138	CTG ...	LDY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
7118	54	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
89156	66	GTG ...	VRH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
88803	42	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1333807	123	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
88975	33	CTG ...	LDC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
89499	48	CTG ...	LGI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
88603	123	GTG ...	VPN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1754027	135	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF

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