Transcript 61844 | MetamORF

Transcript

ID CARD

MetamORF ID

61844

ENSMUST00000202941

Name

Maea-206

Strand

Biotype

retained_intron

Start-end positions

33362571-33371821

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:59003

Aliases

1110030D19Rik,
EMP, ENSMUSG00000079562, Gid9,
Maea, MGI:1891748, NCBI:59003,
OFF:Maea

Chr 5

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
170426	69	ATG ...	MRS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
520915	87	GTG ...	VQP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
179681	111	ATG ...	MQE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Neutrophil
1234879	60	AGG ...	RIQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1236921	261	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1234619	90	AGG ...	RLK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
177893	180	CTG ...	LDP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Neutrophil
64814	87	CTG ...	LKG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
520562	42	GTG ...	VPT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
61843	141	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62756	45	TTG ...	LSF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
522001	39	TTG ...	LNL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
1234819	57	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
521742	78	ATG ...	MIT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, NSC
174007	156	CTG ...	LIQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil
564324	30	ATG ...	MIT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
170536	75	CTG ...	LCT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1061614	123	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
517058	48	ATG ...	MAA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1236644	84	AAG ...	KWR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
517573	33	TTG ...	LSG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Spleen_B_cell

Export data